3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
CCGCG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8GLP_021 not in the Motif Atlas
Geometric match to HL_4V9F_041
Geometric discrepancy: 0.1512
The information below is about HL_4V9F_041
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_48778.2
Basepair signature
cWW-F
Number of instances in this motif group
46

Unit IDs

8GLP|1|L5|C|1480
8GLP|1|L5|C|1481
8GLP|1|L5|G|1482
8GLP|1|L5|C|1483
8GLP|1|L5|G|1484

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LL
60S ribosomal protein L13
Chain Li
60S ribosomal protein L36

Coloring options:


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