3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
GAAAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8GLP_026 not in the Motif Atlas
Geometric match to HL_5TBW_044
Geometric discrepancy: 0.2962
The information below is about HL_5TBW_044
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81100.1
Basepair signature
cWW
Number of instances in this motif group
4

Unit IDs

8GLP|1|L5|G|1764
8GLP|1|L5|A|1765
8GLP|1|L5|A|1766
8GLP|1|L5|A|1767
8GLP|1|L5|C|1768

Current chains

Chain L5
28S rRNA

Nearby chains

Chain SP
40S ribosomal protein S15
Chain SS
40S ribosomal protein S18

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1513 s