HL_8GLP_066

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

8GLP|1|L5|U|4419, 8GLP|1|L5|A|4422

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_066 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.3881

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8GLP|1|L5|C|4417
8GLP|1|L5|G|4418
8GLP|1|L5|U|4419
8GLP|1|L5|PSU|4420
8GLP|1|L5|C|4421
8GLP|1|L5|A|4422
8GLP|1|L5|PSU|4423
8GLP|1|L5|A|4424
8GLP|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lm

60S ribosomal protein L40 (eL40)