3D structure

PDB id
8GLP (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
1.67 Å

Loop

Sequence
ACU(PSU)(PSU)AA(A2M)UCCUU
Length
13 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8GLP_097 not in the Motif Atlas
Homologous match to HL_4V88_199
Geometric discrepancy: 0.267
The information below is about HL_4V88_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_05304.1
Basepair signature
cWW-cWW-F-F-tSH-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8GLP|1|S2|A|569
8GLP|1|S2|C|570
8GLP|1|S2|U|571
8GLP|1|S2|PSU|572
8GLP|1|S2|PSU|573
8GLP|1|S2|A|574
8GLP|1|S2|A|575
8GLP|1|S2|A2M|576
8GLP|1|S2|U|577
8GLP|1|S2|C|578
8GLP|1|S2|C|579
8GLP|1|S2|U|580
8GLP|1|S2|U|581

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SE
40S ribosomal protein S4, X isoform
Chain SJ
40S ribosomal protein S9
Chain SY
40S ribosomal protein S24

Coloring options:


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