HL_8GLP_100

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

8GLP|1|S2|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GLP_100 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3398

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8GLP|1|S2|C|833
8GLP|1|S2|C|834
8GLP|1|S2|C|835
8GLP|1|S2|G|836
8GLP|1|S2|A|837
8GLP|1|S2|G|838
8GLP|1|S2|C|839
8GLP|1|S2|C|840
8GLP|1|S2|G|841

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24