HL_8HFR_006

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

8HFR|1|1e|U|210, 8HFR|1|1e|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.0886

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8HFR|1|1e|C|208
8HFR|1|1e|A|209
8HFR|1|1e|U|210
8HFR|1|1e|A|211
8HFR|1|1e|G|212

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain DO

60S ribosomal protein L4-A

Chain YU

60S ribosomal protein L26-A