HL_8HFR_022

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8HFR|1|1e|C|959, 8HFR|1|1e|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_022 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0521

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8HFR|1|1e|C|958
8HFR|1|1e|C|959
8HFR|1|1e|U|960
8HFR|1|1e|C|961
8HFR|1|1e|A|962
8HFR|1|1e|G|963

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain aw

60S ribosomal protein L28

Chain b3

60S ribosomal protein L29

Chain mS

60S ribosomal protein L42-A