HL_8HFR_027

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8HFR|1|1e|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_027 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.225

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8HFR|1|1e|C|1239
8HFR|1|1e|A|1240
8HFR|1|1e|U|1241
8HFR|1|1e|G|1242
8HFR|1|1e|G|1243
8HFR|1|1e|A|1244
8HFR|1|1e|A|1245
8HFR|1|1e|G|1246
8HFR|1|1e|U|1247
8HFR|1|1e|C|1248
8HFR|1|1e|G|1249

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain KM

YEAST 60S ribosomal protein L12-A

Chain rA

Nucleolar GTP-binding protein 1