HL_8HFR_038

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_038 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.0893

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8HFR|1|1e|G|1719
8HFR|1|1e|U|1720
8HFR|1|1e|U|1721
8HFR|1|1e|U|1722
8HFR|1|1e|A|1723
8HFR|1|1e|U|1724
8HFR|1|1e|C|1725

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain RP

60S ribosomal protein L19-A

Chain nY

60S ribosomal protein L43-A