HL_8HFR_039

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

ACCUUU

Length

6 nucleotides

Bulged bases

8HFR|1|1e|C|1762, 8HFR|1|1e|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_039 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.2346

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

8HFR|1|1e|A|1760
8HFR|1|1e|C|1761
8HFR|1|1e|C|1762
8HFR|1|1e|U|1763
8HFR|1|1e|U|1764
8HFR|1|1e|U|1765

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain RP

60S ribosomal protein L19-A

Chain UF

60S ribosomal protein L22-A

Chain pT

Probable metalloprotease ARX1

Chain rA

Nucleolar GTP-binding protein 1