HL_8HFR_043

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8HFR|1|1e|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_043 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0725

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8HFR|1|1e|C|1923
8HFR|1|1e|U|1924
8HFR|1|1e|U|1925
8HFR|1|1e|C|1926
8HFR|1|1e|G|1927
8HFR|1|1e|G|1928

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain nY

60S ribosomal protein L43-A

Chain v9

Nucleolar GTP-binding protein 2

Chain xI

Shuttling pre-60S factor ECM1