HL_8HFR_061
3D structure
- PDB id
- 8HFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NPC-trapped pre-60S particle
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GCGUUCAUAGC
- Length
- 11 nucleotides
- Bulged bases
- 8HFR|1|1e|U|2842, 8HFR|1|1e|U|2843
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8HFR_061 not in the Motif Atlas
- Geometric match to HL_8KAH_003
- Geometric discrepancy: 0.3987
- The information below is about HL_8KAH_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89457.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8HFR|1|1e|G|2839
8HFR|1|1e|C|2840
8HFR|1|1e|G|2841
8HFR|1|1e|U|2842
8HFR|1|1e|U|2843
8HFR|1|1e|C|2844
8HFR|1|1e|A|2845
8HFR|1|1e|U|2846
8HFR|1|1e|A|2847
8HFR|1|1e|G|2848
8HFR|1|1e|C|2849
Current chains
- Chain 1e
- 25S ribosomal RNA
Nearby chains
- Chain 2f
- 5S ribosomal RNA; 5S rRNA
- Chain SZ
- 60S ribosomal protein L20-A
- Chain Tl
- 60S ribosomal protein L21-A
- Chain sm
- Translation machinery-associated protein 16
- Chain xd
- Ribosome biogenesis protein NSA2
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