HL_8HFR_066

3D structure

PDB id

8HFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

NPC-trapped pre-60S particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HFR_066 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.1809

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8HFR|1|1e|U|3068
8HFR|1|1e|G|3069
8HFR|1|1e|A|3070
8HFR|1|1e|U|3071
8HFR|1|1e|C|3072
8HFR|1|1e|A|3073

Current chains

Chain 1e

25S ribosomal RNA

Nearby chains

Chain RP

60S ribosomal protein L19-A

Chain UF

60S ribosomal protein L22-A

Chain dG

60S ribosomal protein L31-A

Chain rA

Nucleolar GTP-binding protein 1