HL_8HL2_041

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

8HL2|1|A23S|C|354

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_041 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.3007

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

8HL2|1|A23S|C|348
8HL2|1|A23S|U|349
8HL2|1|A23S|G|350
8HL2|1|A23S|G|351
8HL2|1|A23S|A|352
8HL2|1|A23S|A|353
8HL2|1|A23S|C|354
8HL2|1|A23S|G|355

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L24P

50S ribosomal protein L24

Chain L32E

50S ribosomal protein L32e

Chain L46A

Conserved protein