HL_8HL2_042

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

8HL2|1|A23S|G|372, 8HL2|1|A23S|A|373, 8HL2|1|A23S|A|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_042 not in the Motif Atlas

Homologous match to HL_4V9F_012

Geometric discrepancy: 0.179

The information below is about HL_4V9F_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

8HL2|1|A23S|G|370
8HL2|1|A23S|U|371
8HL2|1|A23S|G|372
8HL2|1|A23S|A|373
8HL2|1|A23S|A|374
8HL2|1|A23S|A|375
8HL2|1|A23S|G|376
8HL2|1|A23S|C|377
8HL2|1|A23S|C|378

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4

Chain L24P

50S ribosomal protein L24

Chain L46A

Conserved protein