HL_8HL2_048

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8HL2|1|A23S|A|669, 8HL2|1|A23S|C|670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_048 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3727

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8HL2|1|A23S|U|662
8HL2|1|A23S|C|663
8HL2|1|A23S|U|664
8HL2|1|A23S|U|665
8HL2|1|A23S|G|666
8HL2|1|A23S|A|667
8HL2|1|A23S|A|668
8HL2|1|A23S|A|669
8HL2|1|A23S|C|670
8HL2|1|A23S|A|671

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L32E

50S ribosomal protein L32e