HL_8HL2_049

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAUUAUC

Length

7 nucleotides

Bulged bases

8HL2|1|A23S|U|711, 8HL2|1|A23S|A|713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_049 not in the Motif Atlas

Homologous match to HL_4V9F_019

Geometric discrepancy: 0.2007

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

8HL2|1|A23S|G|709
8HL2|1|A23S|A|710
8HL2|1|A23S|U|711
8HL2|1|A23S|U|712
8HL2|1|A23S|A|713
8HL2|1|A23S|U|714
8HL2|1|A23S|C|715

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL4P

50S ribosomal protein L4