HL_8HL2_055

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCAAAAGAC

Length

9 nucleotides

Bulged bases

8HL2|1|A23S|A|917

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_055 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2431

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8HL2|1|A23S|G|914
8HL2|1|A23S|C|915
8HL2|1|A23S|A|916
8HL2|1|A23S|A|917
8HL2|1|A23S|A|918
8HL2|1|A23S|A|919
8HL2|1|A23S|G|920
8HL2|1|A23S|A|921
8HL2|1|A23S|C|922

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL2P

50S ribosomal protein L2

Chain L37E

50S ribosomal protein L37e