HL_8HL2_060

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGUAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_060 not in the Motif Atlas

Homologous match to HL_5D8H_002

Geometric discrepancy: 0.3434

The information below is about HL_5D8H_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8HL2|1|A23S|C|1232
8HL2|1|A23S|G|1233
8HL2|1|A23S|U|1234
8HL2|1|A23S|A|1235
8HL2|1|A23S|A|1236
8HL2|1|A23S|C|1237
8HL2|1|A23S|A|1238
8HL2|1|A23S|G|1239

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AEFG

Elongation factor 2

Chain L40E

50S ribosomal protein L40E