HL_8HL2_063

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_063 not in the Motif Atlas

Homologous match to HL_4V9F_034

Geometric discrepancy: 0.2652

The information below is about HL_4V9F_034

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

8HL2|1|A23S|G|1425
8HL2|1|A23S|U|1426
8HL2|1|A23S|G|1427
8HL2|1|A23S|A|1428
8HL2|1|A23S|G|1429
8HL2|1|A23S|A|1430
8HL2|1|A23S|A|1431
8HL2|1|A23S|U|1432
8HL2|1|A23S|C|1433

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L19E

50S ribosomal protein L19e

Chain L22P

50S ribosomal protein L22

Chain L31E

50S ribosomal protein L31e

Chain L47A

50S ribosomal protein L47A