HL_8HL2_090

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUCCAAGUACG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_090 not in the Motif Atlas

Homologous match to HL_4V9F_059

Geometric discrepancy: 0.3381

The information below is about HL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8HL2|1|A23S|U|2477
8HL2|1|A23S|U|2478
8HL2|1|A23S|C|2479
8HL2|1|A23S|C|2480
8HL2|1|A23S|A|2481
8HL2|1|A23S|A|2482
8HL2|1|A23S|G|2483
8HL2|1|A23S|U|2484
8HL2|1|A23S|A|2485
8HL2|1|A23S|C|2486
8HL2|1|A23S|G|2487

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain L15P

50S ribosomal protein L15

Chain L21E

50S ribosomal protein L21e

Chain L44E

50S ribosomal protein L44e