HL_8HL2_103

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_103 not in the Motif Atlas

Homologous match to HL_5TBW_186

Geometric discrepancy: 0.2219

The information below is about HL_5TBW_186

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8HL2|1|A5S|C|89
8HL2|1|A5S|G|90
8HL2|1|A5S|A|91
8HL2|1|A5S|G|92
8HL2|1|A5S|A|93
8HL2|1|A5S|G|94

Current chains

Chain A5S

5s rRNA (122-MER)

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain ALX0

50S ribosomal protein L18Ae

Chain L10E

50S ribosomal protein L10e