HL_8HL2_111

3D structure

PDB id

8HL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GACUCGUUUCGAACC

Length

15 nucleotides

Bulged bases

8HL2|1|A5S|U|42

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL2_111 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.2539

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.4

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8HL2|1|A5S|G|35
8HL2|1|A5S|A|36
8HL2|1|A5S|C|37
8HL2|1|A5S|U|38
8HL2|1|A5S|C|39
8HL2|1|A5S|G|40
8HL2|1|A5S|U|41
8HL2|1|A5S|U|42
8HL2|1|A5S|U|43
8HL2|1|A5S|C|44
8HL2|1|A5S|G|45
8HL2|1|A5S|A|46
8HL2|1|A5S|A|47
8HL2|1|A5S|C|48
8HL2|1|A5S|C|49

Current chains

Chain A5S

5s rRNA (122-MER)

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AL5P

50S ribosomal protein L5

Chain L18P

50S ribosomal protein L18