HL_8HL4_054

3D structure

PDB id

8HL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structures and Translocation Mechanism of Crenarchaeota Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.62 Å

Loop

Sequence

ACGUGCAAUU

Length

10 nucleotides

Bulged bases

8HL4|1|A23S|U|883, 8HL4|1|A23S|A|887, 8HL4|1|A23S|U|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8HL4_054 not in the Motif Atlas

Geometric match to HL_5TBW_020

Geometric discrepancy: 0.1821

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8HL4|1|A23S|A|880
8HL4|1|A23S|C|881
8HL4|1|A23S|G|882
8HL4|1|A23S|U|883
8HL4|1|A23S|G|884
8HL4|1|A23S|C|885
8HL4|1|A23S|A|886
8HL4|1|A23S|A|887
8HL4|1|A23S|U|888
8HL4|1|A23S|U|889

Current chains

Chain A23S

23s rRNA (3000-MER)

Nearby chains

Chain AL3P

50S ribosomal protein L3

Chain L22P

50S ribosomal protein L22

Chain L37E

50S ribosomal protein L37e