3D structure

PDB id
8HTZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
8HTZ|1|A|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8HTZ_017 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.0624
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8HTZ|1|A|G|786
8HTZ|1|A|A|787
8HTZ|1|A|U|788
8HTZ|1|A|U|789
8HTZ|1|A|A|790
8HTZ|1|A|G|791
8HTZ|1|A|A|792
8HTZ|1|A|U|793
8HTZ|1|A|A|794
8HTZ|1|A|C|795
8HTZ|1|A|C|796

Current chains

Chain A
16S rRNA

Nearby chains

Chain K
30S ribosomal protein S11
Chain V
Transfer RNA; tRNA
Chain W
mRNA
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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