HL_8I9P_028

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAAUAUCUAG

Length

11 nucleotides

Bulged bases

8I9P|1|C1|A|1434, 8I9P|1|C1|A|2310

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9P_028 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.3419

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8I9P|1|C1|C|1433
8I9P|1|C1|A|1434
8I9P|1|C1|A|1435
8I9P|1|C1|A|1436
8I9P|1|C1|U|1437
8I9P|1|C1|A|2310
8I9P|1|C1|U|2311
8I9P|1|C1|C|2312
8I9P|1|C1|U|2313
8I9P|1|C1|A|2314
8I9P|1|C1|G|2315

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LP

60S ribosomal protein l17-like protein