HL_8I9P_030

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCGAAGUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9P_030 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.3372

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8I9P|1|C1|C|3181
8I9P|1|C1|U|3182
8I9P|1|C1|C|3183
8I9P|1|C1|G|3184
8I9P|1|C1|A|3185
8I9P|1|C1|A|3186
8I9P|1|C1|G|3187
8I9P|1|C1|U|3188
8I9P|1|C1|G|3189

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LO

60S ribosomal protein L16-like protein