HL_8I9P_036

3D structure

PDB id

8I9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Mak16

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUGG

Length

5 nucleotides

Bulged bases

8I9P|1|C2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9P_036 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2526

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8I9P|1|C2|C|171
8I9P|1|C2|C|172
8I9P|1|C2|U|173
8I9P|1|C2|G|174
8I9P|1|C2|G|175

Current chains

Chain C2

RNA (306-MER)

Nearby chains

Chain CB

Ribosome biogenesis protein C8F11.04