HL_8I9T_023

3D structure

PDB id

8I9T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAACUG

Length

8 nucleotides

Bulged bases

8I9T|1|C1|C|1063

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9T_023 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.196

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8I9T|1|C1|C|1058
8I9T|1|C1|U|1059
8I9T|1|C1|U|1060
8I9T|1|C1|A|1061
8I9T|1|C1|A|1062
8I9T|1|C1|C|1063
8I9T|1|C1|U|1064
8I9T|1|C1|G|1065

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LT

60S ribosomal protein l21-like protein