HL_8I9T_035
3D structure
- PDB id
- 8I9T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 8I9T|1|C1|G|2856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9T_035 not in the Motif Atlas
- Homologous match to HL_8C3A_063
- Geometric discrepancy: 0.2156
- The information below is about HL_8C3A_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_79150.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8I9T|1|C1|A|2855
8I9T|1|C1|G|2856
8I9T|1|C1|C|2857
8I9T|1|C1|A|2858
8I9T|1|C1|G|2859
8I9T|1|C1|A|2860
8I9T|1|C1|A|2861
8I9T|1|C1|U|2862
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CH
- Nucleolar GTP-binding protein 1
- Chain CK
- Ribosome biogenesis protein NSA2 homolog
- Chain Cb
- ATP-dependent RNA helicase DBP10
- Chain LH
- 60S ribosomal protein l9-like protein
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