HL_8I9Y_041
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 8I9Y|1|C1|C|1825, 8I9Y|1|C1|G|1827, 8I9Y|1|C1|A|1829
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9Y_041 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.0898
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8I9Y|1|C1|C|1823
8I9Y|1|C1|G|1824
8I9Y|1|C1|C|1825
8I9Y|1|C1|A|1826
8I9Y|1|C1|G|1827
8I9Y|1|C1|C|1828
8I9Y|1|C1|A|1829
8I9Y|1|C1|G|1830
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CS
- AdoMet-dependent rRNA methyltransferase SPB1
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain Lj
- Ribosomal protein L37
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