HL_8I9Z_008

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

8I9Z|1|C1|A|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Z_008 not in the Motif Atlas

Homologous match to HL_5TBW_008

Geometric discrepancy: 0.0779

The information below is about HL_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8I9Z|1|C1|U|270
8I9Z|1|C1|U|271
8I9Z|1|C1|U|272
8I9Z|1|C1|G|273
8I9Z|1|C1|G|274
8I9Z|1|C1|G|275
8I9Z|1|C1|A|276
8I9Z|1|C1|A|277
8I9Z|1|C1|U|278
8I9Z|1|C1|G|279

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CA

Brix domain-containing protein

Chain LL

60S ribosomal protein L13

Chain LN

Ribosomal protein L15