HL_8IAZ_001

3D structure

PDB id

8IAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGGCUAUUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IAZ_001 not in the Motif Atlas

Geometric match to HL_6VMY_003

Geometric discrepancy: 0.2674

The information below is about HL_6VMY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8IAZ|1|E|A|29
8IAZ|1|E|G|30
8IAZ|1|E|G|31
8IAZ|1|E|C|32
8IAZ|1|E|U|33
8IAZ|1|E|A|34
8IAZ|1|E|U|35
8IAZ|1|E|U|36
8IAZ|1|E|U|37

Current chains

Chain E

RNA (207-MER)

Nearby chains

Chain A

Transposase