HL_8IBY_002

3D structure

PDB id

8IBY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of R2 with 5'ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

8IBY|1|E|C|68, 8IBY|1|E|A|70

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IBY_002 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1221

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8IBY|1|E|C|65
8IBY|1|E|C|66
8IBY|1|E|G|67
8IBY|1|E|C|68
8IBY|1|E|G|69
8IBY|1|E|A|70
8IBY|1|E|G|71
8IBY|1|E|G|72

Current chains

Chain E

5'ORF RNA

Nearby chains

Chain C

Reverse transcriptase-like protein