HL_8IBY_005

3D structure

PDB id

8IBY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of R2 with 5'ORF

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAAAAAAG

Length

8 nucleotides

Bulged bases

8IBY|1|E|A|179, 8IBY|1|E|A|180, 8IBY|1|E|A|181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IBY_005 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3088

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8IBY|1|E|C|177
8IBY|1|E|A|178
8IBY|1|E|A|179
8IBY|1|E|A|180
8IBY|1|E|A|181
8IBY|1|E|A|182
8IBY|1|E|A|183
8IBY|1|E|G|184

Current chains

Chain E

5'ORF RNA

Nearby chains

Chain C

Reverse transcriptase-like protein