HL_8IDY_064

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

8IDY|1|2|U|4419, 8IDY|1|2|U|4420

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDY_064 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.317

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8IDY|1|2|C|4417
8IDY|1|2|G|4418
8IDY|1|2|U|4419
8IDY|1|2|U|4420
8IDY|1|2|C|4421
8IDY|1|2|A|4422
8IDY|1|2|U|4423
8IDY|1|2|A|4424
8IDY|1|2|G|4425

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Translation machinery-associated protein 16

Chain T

Leydig cell tumor 10 kDa protein homolog