HL_8IFD_025

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8IFD|1|1A|A|1630

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_025 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.1017

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8IFD|1|1A|G|1627
8IFD|1|1A|C|1628
8IFD|1|1A|G|1629
8IFD|1|1A|A|1630
8IFD|1|1A|A|1631
8IFD|1|1A|A|1632
8IFD|1|1A|G|1633
8IFD|1|1A|A|1634
8IFD|1|1A|C|1635

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1D

60S ribosomal protein L8

Chain 2H

60S ribosomal protein L15

Chain 2d

60S ribosomal protein L37