HL_8IFD_028

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_028 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.3558

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8IFD|1|1A|C|1816
8IFD|1|1A|U|1817
8IFD|1|1A|G|1818
8IFD|1|1A|G|1819
8IFD|1|1A|C|1820
8IFD|1|1A|G|1821
8IFD|1|1A|U|1822
8IFD|1|1A|G|1823

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1G

60S ribosomal protein L5

Chain 2N

60S ribosomal protein L21

Chain 2V

60S ribosomal protein L29