HL_8IFD_054

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8IFD|1|1A|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_054 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0698

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8IFD|1|1A|U|3796
8IFD|1|1A|C|3797
8IFD|1|1A|U|3798
8IFD|1|1A|A|3799
8IFD|1|1A|A|3800
8IFD|1|1A|U|3801
8IFD|1|1A|U|3802
8IFD|1|1A|A|3803
8IFD|1|1A|G|3804

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2P

60S ribosomal protein L23

Chain 2m

Small subunit ribosomal RNA; SSU rRNA