HL_8IFD_060
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UCAAACGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8IFD|1|1A|A|4214, 8IFD|1|1A|C|4221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFD_060 not in the Motif Atlas
- Homologous match to HL_8C3A_056
- Geometric discrepancy: 0.1213
- The information below is about HL_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
8IFD|1|1A|U|4210
8IFD|1|1A|C|4211
8IFD|1|1A|A|4212
8IFD|1|1A|A|4213
8IFD|1|1A|A|4214
8IFD|1|1A|C|4215
8IFD|1|1A|G|4216
8IFD|1|1A|G|4217
8IFD|1|1A|U|4218
8IFD|1|1A|A|4219
8IFD|1|1A|A|4220
8IFD|1|1A|C|4221
8IFD|1|1A|G|4222
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2D
- 60S ribosomal protein L10-like
- Chain 2N
- 60S ribosomal protein L21
- Chain 2V
- 60S ribosomal protein L29
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