HL_8IFD_090
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UCAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFD_090 not in the Motif Atlas
- Homologous match to HL_8C3A_200
- Geometric discrepancy: 0.195
- The information below is about HL_8C3A_200
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_02837.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8IFD|1|2m|U|416
8IFD|1|2m|C|417
8IFD|1|2m|A|418
8IFD|1|2m|G|419
8IFD|1|2m|G|420
8IFD|1|2m|G|421
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2v
- 40S ribosomal protein S11
- Chain 3B
- 40S ribosomal protein S23
- Chain 3G
- 40S ribosomal protein S2
- Chain 3I
- 40S ribosomal protein S9
- Chain 3M
- 40S ribosomal protein S15a
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