HL_8IFD_097
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UGUUCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8IFD|1|2m|G|821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFD_097 not in the Motif Atlas
- Homologous match to HL_8C3A_208
- Geometric discrepancy: 0.1232
- The information below is about HL_8C3A_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8IFD|1|2m|U|820
8IFD|1|2m|G|821
8IFD|1|2m|U|822
8IFD|1|2m|U|823
8IFD|1|2m|C|824
8IFD|1|2m|A|825
8IFD|1|2m|A|826
8IFD|1|2m|A|827
8IFD|1|2m|G|828
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2q
- 40S ribosomal protein S4, X isoform
- Chain 3I
- 40S ribosomal protein S9
- Chain 3N
- 40S ribosomal protein S24
Coloring options: