HL_8IFE_025
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 8IFE|1|1A|A|1630
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFE_025 not in the Motif Atlas
- Homologous match to HL_8C3A_021
- Geometric discrepancy: 0.0926
- The information below is about HL_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56443.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8IFE|1|1A|G|1627
8IFE|1|1A|C|1628
8IFE|1|1A|G|1629
8IFE|1|1A|A|1630
8IFE|1|1A|A|1631
8IFE|1|1A|A|1632
8IFE|1|1A|G|1633
8IFE|1|1A|A|1634
8IFE|1|1A|C|1635
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2H
- 60S ribosomal protein L15
- Chain 2d
- 60S ribosomal protein L37
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