HL_8IFE_050
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- UUUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8IFE|1|1A|A|3642, 8IFE|1|1A|A|3643, 8IFE|1|1A|U|3644, 8IFE|1|1A|A|3648
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFE_050 not in the Motif Atlas
- Homologous match to HL_5TBW_046
- Geometric discrepancy: 0.1755
- The information below is about HL_5TBW_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8IFE|1|1A|U|3639
8IFE|1|1A|U|3640
8IFE|1|1A|U|3641
8IFE|1|1A|A|3642
8IFE|1|1A|A|3643
8IFE|1|1A|U|3644
8IFE|1|1A|U|3645
8IFE|1|1A|A|3646
8IFE|1|1A|A|3647
8IFE|1|1A|A|3648
8IFE|1|1A|A|3649
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1D
- 60S ribosomal protein L8
- Chain 2d
- 60S ribosomal protein L37
Coloring options: