HL_8IFE_060

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8IFE|1|1A|A|4214, 8IFE|1|1A|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_060 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1155

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8IFE|1|1A|U|4210
8IFE|1|1A|C|4211
8IFE|1|1A|A|4212
8IFE|1|1A|A|4213
8IFE|1|1A|A|4214
8IFE|1|1A|C|4215
8IFE|1|1A|G|4216
8IFE|1|1A|G|4217
8IFE|1|1A|U|4218
8IFE|1|1A|A|4219
8IFE|1|1A|A|4220
8IFE|1|1A|C|4221
8IFE|1|1A|G|4222

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2D

60S ribosomal protein L10-like

Chain 2N

60S ribosomal protein L21

Chain 2V

60S ribosomal protein L29