HL_8IFE_106

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

8IFE|1|2m|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_106 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1222

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8IFE|1|2m|G|1245
8IFE|1|2m|A|1246
8IFE|1|2m|C|1247
8IFE|1|2m|U|1248
8IFE|1|2m|C|1249
8IFE|1|2m|A|1250
8IFE|1|2m|A|1251
8IFE|1|2m|C|1252
8IFE|1|2m|A|1253
8IFE|1|2m|C|1254

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 21

40S ribosomal protein S20

Chain 2x

40S ribosomal protein S16

Chain 3E

40S ribosomal protein S29