HL_8IFE_107

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

8IFE|1|2m|U|1300, 8IFE|1|2m|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFE_107 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3858

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8IFE|1|2m|A|1295
8IFE|1|2m|U|1296
8IFE|1|2m|U|1297
8IFE|1|2m|G|1298
8IFE|1|2m|A|1299
8IFE|1|2m|U|1300
8IFE|1|2m|A|1301
8IFE|1|2m|G|1302
8IFE|1|2m|C|1303
8IFE|1|2m|U|1304

Current chains

Chain 2m

18S ribosomal RNA

Nearby chains

Chain 2w

40S ribosomal protein S15

Chain 3E

40S ribosomal protein S29

Chain 3R

Ubiquitin-40S ribosomal protein S27a