HL_8INE_059

3D structure

PDB id

8INE (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

8INE|1|2|A|4214, 8INE|1|2|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8INE_059 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1826

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8INE|1|2|U|4210
8INE|1|2|C|4211
8INE|1|2|A|4212
8INE|1|2|A|4213
8INE|1|2|A|4214
8INE|1|2|C|4215
8INE|1|2|G|4216
8INE|1|2|G|4217
8INE|1|2|U|4218
8INE|1|2|A|4219
8INE|1|2|6MZ|4220
8INE|1|2|C|4221
8INE|1|2|G|4222

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain R

Translation machinery-associated protein 16

Chain c

60S ribosomal protein L21