3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUUGGGAAUG
Length
10 nucleotides
Bulged bases
8INF|1|2|G|294, 8INF|1|2|A|295, 8INF|1|2|A|296
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INF_008 not in the Motif Atlas
Homologous match to HL_5TBW_008
Geometric discrepancy: 0.141
The information below is about HL_5TBW_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

8INF|1|2|C|289
8INF|1|2|U|290
8INF|1|2|U|291
8INF|1|2|G|292
8INF|1|2|G|293
8INF|1|2|G|294
8INF|1|2|A|295
8INF|1|2|A|296
8INF|1|2|U|297
8INF|1|2|G|298

Current chains

Chain 2
28S rRNA

Nearby chains

Chain L
60S ribosomal protein L27a
Chain Q
60S ribosomal protein L13
Chain U
60S ribosomal protein L15
Chain W
60S ribosomal protein L36a

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.355 s