3D structure

PDB id
8INF (explore in PDB, NAKB, or RNA 3D Hub)
Description
human nuclear pre-60S ribosomal particle - State F'
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UGUAACAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8INF_032 not in the Motif Atlas
Homologous match to HL_8C3A_028
Geometric discrepancy: 0.2105
The information below is about HL_8C3A_028
Detailed Annotation
GNRA wlth tandem sheared
Broad Annotation
No text annotation
Motif group
HL_27115.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
22

Unit IDs

8INF|1|2|U|2006
8INF|1|2|G|2007
8INF|1|2|U|2008
8INF|1|2|A|2009
8INF|1|2|A|2010
8INF|1|2|C|2011
8INF|1|2|A|2012
8INF|1|2|A|2013

Current chains

Chain 2
28S rRNA

Nearby chains

Chain 4
GTP-binding protein 4
Chain J
mRNA turnover protein 4 homolog
Chain s
Ribosome biogenesis protein NSA2 homolog
Chain y
60S ribosomal protein L12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.475 s